LEADER 00000cam a2200637Ka 4500 001 ocn738434095 003 OCoLC 005 20160527040326.2 006 m o d 007 cr cnu---unuuu 008 110705s2010 enka ob 001 0 eng d 010 2010005252 019 754711838 020 9781848162488|q(electronic book) 020 1848162480|q(electronic book) 020 |z9781848162471 020 |z1848162472 035 (OCoLC)738434095|z(OCoLC)754711838 040 N$T|beng|epn|cN$T|dEBLCP|dE7B|dCDX|dOCLCQ|dDEBSZ|dOCLCQ |dMHW|dOCLCQ|dYDXCP|dI9W|dOCLCQ|dOCLCF|dOCLCQ 049 RIDW 050 4 QC318.E57|bL45 2010eb 072 7 SCI|x065000|2bisacsh 082 04 536/.7|222 090 QC318.E57|bL45 2010eb 100 1 Lelièvre, Tony.|0https://id.loc.gov/authorities/names/ nb2006021127 245 10 Free energy computations :|ba mathematical perspective / |cTony Lelièvre, Mathias Rousset, Gabriel Stoltz. 264 1 London ;|aHackensack, N.J. :|bImperial College Press, |c[2010] 264 4 |c©2010 300 1 online resource (xii, 458 pages) :|billustrations 336 text|btxt|2rdacontent 337 computer|bc|2rdamedia 338 online resource|bcr|2rdacarrier 340 |gpolychrome|2rdacc 347 text file|2rdaft 504 Includes bibliographical references and index. 505 0 1. Introduction. 1.1. Computational statistical physics : some landmarks. 1.2. Microscopic description of physical systems. 1.3. Free energy and its numerical computation. 1.4. Summary of the mathematical tools and structure of the book -- 2. Sampling methods. 2.1. Markov chain methods. 2.2. Continuous stochastic dynamics. 2.3. Convergence of sampling methods. 2.4. Methods for alchemical free energy differences. 2.5. Histogram methods -- 3. Thermodynamic integration and sampling with constraints. 3.1. Introduction : the alchemical setting. 3.2. The reaction coordinate case : configurational space sampling. 3.3. The reaction coordinate case : phase space sampling -- 4. Nonequilibrium methods. 4.1. The Jarzynski equality in the alchemical case. 4.2. Generalized Jarzynski-Crooks fluctuation identity. 4.3. Nonequilibrium stochastic methods in the reaction coordi-nate case. 4.4. Path sampling strategies -- 5. Adaptive methods. 5.1. Adaptive algorithms : a general framework. 5.2. Convergence of the adaptive biasing force method -- 6. Selection. 6.1. Replica selection framework. 6.2. Selection in adaptive methods. 520 This monograph provides a general introduction to advanced computational methods for free energy calculations, from the systematic and rigorous point of view of applied mathematics. Free energy calculations in molecular dynamics have become an outstanding and increasingly broad computational field in physics, chemistry and molecular biology within the past few years, by making possible the analysis of complex molecular systems. This work proposes a new, general and rigorous presentation, intended both for practitioners interested in a mathematical treatment, and for applied mathematicians inte. 588 0 Print version record. 590 eBooks on EBSCOhost|bEBSCO eBook Subscription Academic Collection - North America 650 0 Gibbs' free energy.|0https://id.loc.gov/authorities/ subjects/sh85054858 650 0 Statistical physics|0https://id.loc.gov/authorities/ subjects/sh85127573|xMathematical models.|0https:// id.loc.gov/authorities/subjects/sh2002007921 650 7 Gibbs' free energy.|2fast|0https://id.worldcat.org/fast/ 942533 650 7 Statistical physics|xMathematical models.|2fast|0https:// id.worldcat.org/fast/1132079 650 7 Statistical physics.|2fast|0https://id.worldcat.org/fast/ 1132076 655 0 Electronic books. 655 4 Electronic books. 700 1 Stoltz, Gabriel.|0https://id.loc.gov/authorities/names/ no2010139614 700 1 Rousset, Mathias,|d1980-|0https://id.loc.gov/authorities/ names/no2010139616 776 08 |iPrint version:|aLelièvre, Tony.|tFree energy computations.|dLondon ; Hackensack, N.J. : Imperial College Press, ©2010|z9781848162471|w(DLC) 2010005252 |w(OCoLC)244765923 856 40 |uhttps://rider.idm.oclc.org/login?url=http:// search.ebscohost.com/login.aspx?direct=true&scope=site& db=nlebk&AN=374863|zOnline eBook. Access restricted to current Rider University students, faculty, and staff. 856 42 |3Instructions for reading/downloading this eBook|uhttp:// guides.rider.edu/ebooks/ebsco 901 MARCIVE 20231220 948 |d20160616|cEBSCO|tebscoebooksacademic|lridw 994 92|bRID