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BestsellerE-book
Author Du, Dingzhu.

Title Pooling designs and nonadaptive group testing : important tools for DNA sequencing / Ding-Zhu Du, Frank K. Hwang.

Publication Info. New Jersey : World Scientific, [2006]
©2006

Item Status

Description 1 online resource (ix, 237 pages) : illustrations.
Physical Medium polychrome
Description text file
Series Series on applied mathematics ; v. 18
Series on applied mathematics ; v. 18.
Bibliography Includes bibliographical references and index.
Access Use copy Restrictions unspecified MiAaHDL
Reproduction Electronic reproduction. [S.l.] : HathiTrust Digital Library, 2011. MiAaHDL
System Details Master and use copy. Digital master created according to Benchmark for Faithful Digital Reproductions of Monographs and Serials, Version 1. Digital Library Federation, December 2002. http://purl.oclc.org/DLF/benchrepro0212 MiAaHDL
Processing Action digitized 2011 HathiTrust Digital Library committed to preserve MiAaHDL
Contents Ch. 1. Introduction. 1.1. Group testing. 1.2. Nonadaptive group testing. 1.3. Applications in molecular biology. 1.4. Pooling designs for two simple applications. 1.5. Pooling designs and mathematics. 1.6. An outline of the book. References -- ch. 2. Basic theory on separating matrices. 2.1. d-Separable and d-separable matrices. 2.2. d-disjunct matrices. 2.3. The minimum number of pools for given d and n. 2.4. Combinatorial bounds for d-disjunct matrices with constant weight. 2.5. Asymptotic lower and upper bounds. 2.6. (d, r)-disjunct matrices. 2.7. Error-tolerance. References -- ch. 3. Deterministic designs. 3.1. t-designs and t-packing. 3.2. Direct construction. 3.3. Explicit construction of selectors. 3.4. Grid designs. 3.5. Error-correcting code. 3.6. Transversal designs. 3.7. The d = 2 case. References -- ch. 4. Deterministic designs from partial orders. 4.1. Subset containment designs. 4.2. Partial order of faces in a simplicial complex. 4.3. Monotone graph properties. 4.4. Partial order of linear spaces over a finite field. 4.5. Atomic poset. References -- ch. 5. Random pooling designs and probabilistic analysis. 5.1. Introduction to random designs. 5.2. A general approach to compute probabilities of unresolved clones. 5.3. Random incidence designs. 5.4. Random k-set designs. 5.5. Random r-size designs. 5.6. Random distinct k-set designs. 5.7. Intersection pooling designs. 5.8. Subset containment designs in extended use. 5.9. Edge-representative decoding with r = 2 and d = 3. 5.10. Some trivial 2-stage pooling designs. References -- ch. 6. Pooling designs on complexes. 6.1. Introduction. 6.2. A construction of (H : d; z)-disjunct matrix. 6.3. (d, r; z]-disjunct matrix. 6.4. Constructions for (d, r; z]-disjunct matrices. 6.5. Random designs. 6.6. Trivial two-stage pooling designs for complete r-graphs. 6.7. Sequential algorithms for H[symbol]. References -- ch. 7. Contig sequencing. 7.1. Introduction. 7.2. Some probability analysis of a k-subset. 7.3. Sequential algorithms. 7.4. Nonadaptive algorithms for matching. 7.5. The 3-stage procedure. References -- ch. 8. The inhibitor model. 8.1. Introduction. 8.2. 1-round algorithm. 8.3. Sequential and k-round algorithms. 8.4. Some other inhibitor models. References -- ch. 9. Hyperplane designs. 9.1. Introduction. 9.2. m-dimensional arrays. 9.3. A K[symbol] x K[symbol] decomposition of K[symbol]. 9.4. Efficiency. 9.5. Other transversal designs. 9.6. Two recent applications. References -- ch 10. Non-unique probe selection. 10.1. Introduction. 10.2. Complexity of pooling designs. 10.3. Complexity of minimum pooling designs. 10.4. Approximations of minimum pooling designs. References.
Local Note eBooks on EBSCOhost EBSCO eBook Subscription Academic Collection - North America
Subject Molecular biology -- Mathematics.
Molecular biology -- Mathematics.
Molecular biology.
Nucleotide sequence -- Mathematics.
Nucleotide sequence -- Mathematics.
Nucleotide sequence.
Combinatorial group theory.
Combinatorial group theory.
Sequence Analysis, DNA -- methods.
Models, Theoretical.
Genre/Form Electronic books.
Added Author Hwang, Frank.
Other Form: Print version: Du, Dingzhu. Pooling designs and nonadaptive group testing. New Jersey : World Scientific, ©2006 (DLC) 2006046417
Online version: Du, Dingzhu. Pooling designs and nonadaptive group testing. New Jersey : World Scientific, ©2006 (OCoLC)761806724
ISBN 9789812773463 (electronic book)
9812773460 (electronic book)
9789812568229 (alkaline paper)
9812568220 (alkaline paper)
9812568220 (alkaline paper)